species:   Fuoxy
pid:       PID0842
parent:    Fon_microconidia-m0018
paralog:   
locus:     Supercontig_1.6:588964-589120
matures:   ['CACGUUGGACGUUGGGGGCGGC', 'CACCCCGUCGAACCAGCGACAG']
srr:       SRR3921571
genome:    /Users/jax/+Genomes/Fungal_genomes/Fuoxy.broad.fusarium_oxysporum_f._sp._melonis_26406_1_supercontigs.fa
alignment: /media/data/njohnson/+SeqLibraries/FunHP_libraries/Jiang2017-hp.SRR3921571.cram
call:      samtools view /media/data/njohnson/+SeqLibraries/FunHP_libraries/Jiang2017-hp.SRR3921571.cram Supercontig_1.6:588964-589120

1 out of bounds
10 alignments
10 proper strand
8 stranded perfect matches

        ************************                                                                                             ************************        
UUGAGCAUCUCACGUUGGACGUUGGGGGCGGCAGGCAGGCUUCCCUGGAUCCACAUCGCGUUCAUCAGAACCUCCCCAUAUGAGCAUCGCAGCUCCGAUGAAUCCACAGUAACGGCACUUAUCACGCCACCCCGUCGAACCAGCGACAGAGCUUGGG
((((((.(((..((((((.((.(((((..(((..(.(((((....(((((...(((((.((((....))))..........((((......))))))))).))))).......))).))...)..))).))))).))..))))))..))))))))).
----------CACGUUGGACGUUGGGGGCGGC----------------------------------------------------------------------------------------------------------------------------- l=22 a=7 c
-------------------------------------------------------------------------------------------------------------------------------CACCCCGUCGAACCAGCGACAG-------- l=22 a=0 c*
----------CACGUUGGACGUUGGGGGCGGC----------------------------------------------------------------------------------------------------------------------------- l=22 a=7 ma
-------------------------------------------------------------------------------------------------------------------------------CACCCCGUCGAACCAGCGACAG-------- l=22 a=0 ma*

------AUgUCACGUUGGACGUUGGGGGCGGC----------------------------------------------------------------------------------------------------------------------------- l=26 a=1 
------AUgUCACGUUGGACGUUGGGGGCGGCA---------------------------------------------------------------------------------------------------------------------------- l=27 a=1 
----------CACGUUGGACGUUGGGGGCGGC----------------------------------------------------------------------------------------------------------------------------- l=22 a=7 (c,ma)
----------CACGUUGGACGUUGGGGGCGGCAGGCA------------------------------------------------------------------------------------------------------------------------ l=27 a=1 

mb-01011
ax-1001011
ku-01
ss-101111101110
fn-111
